Reproduce Our Projects!

Good Contribution Opportunity!

Add entries to data/repos.yml! Think of a better way to organize the GitHub repos and display the information so other lab members can choose the projects most relevant to their trajectory. Test out your changes and open a pull request!

import pandas as pd
import yaml
from itables import init_notebook_mode, show
import itables.options as opt
from pathlib import Path
import re

# Initialize itables
init_notebook_mode(all_interactive=True)

# Function to make DOIs clickable
def make_doi_clickable(text):
    doi_pattern = r'(https://doi\.org/[^\s)]+)'
    return re.sub(doi_pattern, r'<a href="\1" target="_blank">\1</a>', text)

# Create relative path to repos file
# Goes up two levels (../../) from current .qmd location to reach root
repo_path = Path('../../data/repos.yml')

# Load YAML data
with open(repo_path, 'r') as f:
    data = yaml.safe_load(f)

# Convert to DataFrame
df = pd.DataFrame(data['repos'])

# Make DOIs clickable in reference column
df['reference'] = df['reference'].apply(make_doi_clickable)

# Format the repo column to include HTML links
df['repo'] = df.apply(lambda x: f'<a href="{x["repo"]["url"]}" target="_blank">{x["repo"]["name"]}</a>', axis=1)

# Join topics with semicolons
df['topics'] = df['topics'].apply(lambda x: '; '.join(x))

# Configure itables options
opt.classes = ["display", "cell-border"]
opt.columnDefs = [
    {   # Reference column
        "width": "50%", 
        "targets": 0
    },  
    {   # Year column
        "width": "5%", 
        "targets": 1,
        "className": "dt-left"
    },   
    {   # Repo column
        "width": "15%", 
        "targets": 2
    },  
    {   # Topics column
        "width": "30%", 
        "targets": 3
    }   
]
opt.showIndex = False

# By default, show newest to oldest
sorted_df = df.sort_values('year', ascending=False)

# Display the interactive table
show(sorted_df)

reference	year	repo	topics
Loading ITables v2.2.4 from the init_notebook_mode cell... (need help?)